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Research on real-world knowledge mining and knowledge graph completion v(III):structured information extraction from real world data of bladder cancer based on regular expression

Published on Mar. 29, 2024Total Views: 300 timesTotal Downloads: 425 timesDownloadMobile

Author: MA Wenhao 1, 2 SHI Hanyu 3 HUANG Qiao 1 HUANG Xing 4 WANG Yongbo 1 WANG Shichun 1 REN Xiangying 1 SHI Yue 5 JIN Yinghui 1 YAN Siyu 1

Affiliation: 1. Center for Evidence-Based and Translational Medicine, Zhongnan Hospital of Wuhan University, Wuhan 430071, China 2. The Second Clinical College of Wuhan University, Wuhan 430071, China 3. HongYi Honor College of Wuhan University, Wuhan 430072, China 4. Department of Urology, The First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou 310003, China 5. Information Center, Zhongnan Hospital of Wuhan University, Wuhan 430071, China

Keywords: Real-world data Information extraction Regular expression Natural language processing Electronic medical record data Bladder cancer

DOI: 10.12173/j.issn.1004-5511.202308006

Reference: Ma WH, Shi HY, Huang Q, Huang X, Wang YB, Wang SC, Ren XY, Shi Y, Jin YH, Yan SY. Research on real-world knowledge mining and knowledge graph completion (III): structured information extraction from real world data of bladder cancer based on regular expression[J]. Yixue Xinzhi Zazhi, 2024, 34(3): 312-321. DOI:10.12173/j.issn.1004-5511.202308006.[Article in Chinese]

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Abstract

With the development of medical big data, the real-world study (RWS) has received increasing attention in recent years, and has a good promising prospect. However, there are still some challenges in the implementation of RWS that has led to extensive discussion among scholars. The most urgent issue currently to be addressed is the unstructured nature of real-world data (RWD). Based on regular expressions, this study used rule-based information extraction method to extract structured information from admission records, pathological reports, surgical records, and image records of bladder cancer patients in Zhongnan Hospital of Wuhan University in recent years, and evaluated the extraction effects with accuracy and recall as indicators, aiming to provide reference for subsequent research.

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References

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