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Research on real-world knowledge mining and knowledge graph completion (II): Methods and pro-gress of information extraction from unstructured electronic medical records

Published on Mar. 13, 2023Total Views: 2366 timesTotal Downloads: 1028 timesDownloadMobile

Author: Si-Yu YAN 1 Xu-Hui LI 1 Mu-Kun CHEN 2 Hai-Feng ZHU 2 Jie-Jun TAN 2 Kuang GAO 2 Yong-Bo WANG 1 Qiao HUANG 1 Xiang-Ying REN 1 Ying-Hui JIN 1 Xing-Huan WANG 1

Affiliation: 1. Center for Evidence-Based and Translational Medicine, Zhongnan Hospital of Wuhan University, Wuhan 430071, China 2. School of Computer Science, Wuhan University, Wuhan 430072, China

Keywords: Unstructured data Electronic medical record Information extraction Text mining Natural language processing Ontology Real-world data

DOI: 10.12173/j.issn.1004-5511.202301016

Reference: Yan SY, Li XH, Chen MK, Zhu HF, Tan JJ, Gao K, Wang YB, Huang Q, Ren XY, Jin YH, Wang XH. Research on real-world knowledge mining and knowledge graph completion (II): Methods and progress of information extraction from unstructured electronic medical records[J]. Yixue Xinzhi Zazhi, 2023, 33(5): 358-365. DOI: 10.12173/j.issn.1004-5511.202301016. [Article in Chinese]

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Abstract

With the popularization and promotion of information technology, healthcare big data is growing exponentially, and clinical real-world research based on healthcare big data is receiving increasing attention. The hospital electronic medical record (EMR) records the whole process of diagnosis and treatment of patients in the "real-world", and is one of the most supportive data sources for clinical decision-making. However, the existence of a large number of unstructured text data in EMR data increases the difficulty of data processing and restricts the development of research based on EMR data. Advanced methods such as information technology and artificial intelligence need to be applied to the processing of unstructured EMR data to accelerate the transformation of data value. This paper summarizes the current common methods of unstructured medical data processing, including methods based on dictionaries and rules, methods based on traditional machine learning and deep learning, and methods based on cognitive models represented by ontology, and also discusses the problems of standardization and transparent reporting when processing unstructured EMR data and looks forward to the relevant development.

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References

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